PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.332450.1
Common NameCsa_1G697530, LOC101207910
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 395aa    MW: 42850.2 Da    PI: 6.8739
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.332450.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.70.000492522901255
                     HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Cucsa.332450.1 252 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 290
                     6678889999999999998.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.534240289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.19E-6250294No hitNo description
SuperFamilySSF474595.89E-10250300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-7254296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MNRGVLQSSV MQQMMGSENP NWWNMMNISG SMRSSTITQH SSPNHTNNSS SSSNILFPHS  60
SLPFPSNCYY DAQDHHLIPE SWSQLLLGGL VGEDDQKGCM GMFQSKKLED WEEEILNSNN  120
NNTQHQQQVD VKKEHSPHAS SYVYGHGGGG SGGGGVGGGV GGDDYQLVAS KQNWSPMIQS  180
SSPQSCVTSF SSNMLDFSNN NNNNKSLADH SRPRNPPQVL DRSSECNSNV NGGAVKKARV  240
QSSSNQTTFK VRKEKLGDRI TALHQLVSPF GKTDTASVLL EAIGYIRFLQ SQIEALSLPY  300
LGNTSGSTRQ HQHQQHSLQG ERNCVFPEDP GQLLNENCLK RKGVSEQEEE GKKDLRSRGL  360
CLVPVSCTLQ VGSDNGADYW APAFGGGGGG GVFR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818111e-129LN681811.1 Cucumis melo genomic scaffold, anchoredscaffold00069.
GenBankLN7132561e-129LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004142511.10.0PREDICTED: transcription factor bHLH68 isoform X1
SwissprotQ8S3D11e-89BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A0A0M1200.0A0A0A0M120_CUCSA; Uncharacterized protein
STRINGVIT_11s0016g03560.t011e-144(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12233379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.12e-75bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]